PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10629.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 195aa    MW: 22409 Da    PI: 7.7148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10629.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-06140160426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   e Cr++++   C++ ++C+FaH+
  MLOC_10629.3 140 EVCRDYLK-NMCNR-ESCRFAHP 160
                   89******.*****.*******9 PP

2zf-CCCH21.34.8e-07170192226
                   -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   k e Cr+f r G+C + ++C+F H+
  MLOC_10629.3 170 KVEVCRDFKR-GECTR-PTCRFYHP 192
                   89********.*****.*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0333358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9013659IPR000571Zinc finger, CCCH-type
PfamPF146081.53756No hitNo description
PROSITE profilePS501039.7796187IPR000571Zinc finger, CCCH-type
SMARTSM003568.46186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056136162IPR000571Zinc finger, CCCH-type
SMARTSM003560.028137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001140161IPR000571Zinc finger, CCCH-type
PfamPF146080.0059142160No hitNo description
SMARTSM003560.011168193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.929169194IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-5170192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046836Biological Processglycolipid transport
GO:0005737Cellular Componentcytoplasm
GO:0017089Molecular Functionglycolipid transporter activity
GO:0046872Molecular Functionmetal ion binding
GO:0051861Molecular Functionglycolipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
FCTSYADVLI LCYDDFLIHL PQGCQLSILL LNIYQVCRDF ARGRCSRSAN ECRFLHHSSV  60
QECAIVCQDF LRGRCDRISC RYTHVIAQPM LPPPMRDVPM QMPYPEMVYM PPPPPPLGIP  120
MMAPPLSPPR GFADNKNTVE VCRDYLKNMC NRESCRFAHP DSQSEVAHDK VEVCRDFKRG  180
ECTRPTCRFY HPSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691860.0AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579801.11e-91PREDICTED: zinc finger CCCH domain-containing protein 28-like
SwissprotQ0JD072e-75C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLM0UG221e-142M0UG22_HORVD; Uncharacterized protein
STRINGBRADI5G10750.14e-91(Brachypodium distachyon)